PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15192.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 549aa    MW: 60255.7 Da    PI: 9.5898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15192.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.3e-14265315255
                 HHHHHHHHHHHHHHHHHH.HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsa.feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r +h++ E+rRR++iN++ f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  KHN15192.1 265 RSKHSATEQRRRSKINDRqFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 315
                 889*************9768*********9....9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-21260336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15261335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.887263314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-12265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.64E-14265319No hitNo description
SMARTSM003538.4E-11269320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MELPQACPLG TEGRKPTHDF LSLYSNSTAQ QDPRPPSQGS YLKTHDFLQP LERVETKASA  60
KEEATDEISS VVQKPRSPSV EHLLPGGIGT YSISHISYVN NNNNNNQRVP KPETSSLYGR  120
QATSTDRNEE NSNCSSYTSS GFTLWEESSG KRGKTGKENN AGEKPSLGES AAKLGQWTTT  180
ERTSQSFSNN RHGSFSSRSS SQTTGLKNQS FIEMMKSARD SAQNEVLESE ETFFLKKEPS  240
SNTQRAELLV KVDGKSTDQK PNTPRSKHSA TEQRRRSKIN DRQFQMLREL IPHSDQKRDK  300
ASFLLEVIEY IHFLQEKVHK YEGSFQGWSN EPERLMPWRN NDKPAESFQP RGTDNGSSPS  360
PTIPGSTQNV ESGLSTATTS KTMDHQAGKM NKAFPIPIPS QLNFFTPTQI GGPGGVVSQL  420
THRSASDAEN TKYQPSVECQ TMTATNEKLK AKELTIEGGA ISISSVHSKG LLHTLTHALQ  480
SSGVDLSQAS ISVQIELGKQ ANIRSNVPVS VCGAKDGAVP SNNQKMMRSR VASSGKSDQA  540
VKKLKTCRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-105AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524496.10.0PREDICTED: transcription factor BIM1-like isoform X1
SwissprotQ9LEZ31e-127BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A0B2Q5V60.0A0A0B2Q5V6_GLYSO; Transcription factor BIM1
STRINGGLYMA05G07490.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-123bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]